Science

ORCID: 0000-0002-4417-1018

Scientific Publications Total: 51

  1. S Beck*, AM Berner, G Bignell, M Bond, MJ Callanan, O Chervova, L Conde, M Corpas, S Ecker, HR Elliott, SA Fioramonti, AM Flanagan, R Gaentzsch, D Graham, D Gribbin, JA Guerra-Assunção, R Hamoudi, V Harding, PL Harrison, J Herrero, J Hofmann, E Jones, S Khan, J Kaye, P Kerr, E Libertini, L McCormack, I Moghul, N Pontikos, S Rajanayagam, K Rana, M Semega-Janneh, CP Smith, L Strom, S Umur, AP Webster, K Wint, J Wood (in preparation) PGP-UK: a research and citizen science hybrid project in support of personalized medicine.
  2. A Bueno, R Rodríguez-López, A Reyes-Palomares, E Rojano, M Corpas, J Nevado, P Lapunzina, F Sánchez-Jiménez and JAG Ranea* (in Revision) Phenotype-loci associations in networks of patients with rare disorders: application to assist in the diagnosis of novel clinical cases. European Journal of Human Genetics
  3. A Thorogood*, J Bobe, B Prainsack, A Middleton, E Scott, S Nelson, M Corpas, N Bonhomme, L Lyman Rodriguez, M Murtagh, and Erika Kleiderman on behalf of the Participant Values Task Team of the Global Alliance for Genomics and Health (in Revision). Let’s APPLaUD: Access for Patients and Participants to Individual-Level Uninterpreted Genomic Data. Human Genomics
  4. M Corpas*, NV Kovalevskaya, FGG Nielsen (accepted) A FAIR Guide for Data Providers to Maximise Sharing of Human Genomic Data. PLOS Comput Biol
  5. H Artaza, JM Hancock, RC Jimenez, M Corpas* (2017). PIsCO: A Performance indicators framework for collection of bioinformatics resource metrics. PeerJ Preprints
  6. R Shaw, M Corpas* (2017). A Collection Of 2,280 Public Domain (CC0) Curated Genotypes. bioRxiv, 127241
  7. M Tamiru, S Natsume, H Takagi, B White, H Yaegashi, M Shimizu, K Yoshida, A Uemura, Ki Oikawa, A Abe, N Urasaki, H Matsumura, P Babil, S Yamanaka, R Matsumoto, S Muranaka, G Girma, A Lopez-Montes, M Gedil, R Bhattacharjee, M Abberton, PL Kumar, I Rabbi, M Tsujimura, T Terachi, W Haerty, M Corpas, S Kamoun, G Kahl, H Takagi, R Asiedu, R Terauchi (2017). Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination. BMC Biology 15 (1), 86
  8. RC Jiménez*, M Kuzak, M Alhamdoosh, M Barker, B Batut, M Borg, SCapella-Gutierrez, NC Hong, M Cook, M Corpas, M Flannery, L Garcia, JL Gelpí, S Gladman, C Goble, M González-Ferreiro, A Gonzalez-Beltran, PC Griffin, B Grüning, J Hagberg, P Holub, R Hooft, J Ison, DS Katz, B Leskošek, F López-Gómez, LJ Oliveira, D Mellor, R Mosbergen, N Mulder, Y Perez-Riverol, R Pergl, H Pichler, B Pope, F Sanz, MV Schneider, V Stodden, R Suchecki, R Svobodová-Vařeková, HA Talvik, I Todorov, A Treloar, S Tyagi, M van Gompel, D Vaughan, A Via, Xi Wang, NS Watson-Haigh, S Crouch. (2017) Four simple recommendations to encourage best practices in research software. F1000Research. 2017;6:ELIXIR-876.
  9. C Horro, M Cook, TK Attwood, MD Brazas, JM Hancock, P Palagi, M Corpas, R Jimenez* (2017). BioCIDER: a Contextualisation InDEx for biological Resources discovery. 2017 Aug 15;33(16):2607-2608
  10. MD Brazas, C Brooksbank, RC Jimenez, S Blackford, PM Palagi, J De Las Rivas, BFF Ouellette, J Kumuthini, E Korpelainen, F Lewitter, CWG van Gelder, N Mulder, M Corpas, MV Schneider, TW Tan, D Clements, A Davies, TK Attwood (2017). A global perspective on bioinformatics training needs. bioRxiv, 098996
  11. H Artaza, N Chue Hong, M Corpas*, A Corpuz, R Hooft, RC Jimenez, B Leskošek, BG Olivier, J Stourac, R Svobodová-Vařeková*, T Van Parys (2016). Top 10 metrics for life science software good practices. F1000Research2016,5(ELIXIR):2000
  12. A Reyes-Palomares, A Bueno, F Sanchez-Jimenez, MA Medina, M Corpas, JAG Ranea* (2016). Systematic Identification of Phenotypically Enriched Loci Using a Patient Network of Genomic Disorders. BMC Genomics 2016, 17:232
  13. M Corpas* (2016) Progress on the genome characterisation of D. alata. Plant and Animal Genome XXIV Conference
  14. M Corpas*, W Valdivia-Granda, N Torres, B Greshake, S. Reddy, A Coletta, A Knaus, AP Harrison, M Cariaso, F Moran, F Nielsen, D Swan, DY Weiss-Solís, P Krawitz, F Schacherer, P Schols, H Yang, P Borry, G Glusman, PN Robinson (2015). Crowdsourced Analysis of Family Genomes. BMC Genomics
  15. G Yachdav, T Goldberg, S Wilzbach, D Dao, I Shih, S Choudhary, S Crouch, M Franz, A García, LJ García, BA Grüning, D Inupakutika, I Sillitoe, AS Thanki, B Vieira, JM Villaveces, MV Schneider, S Lewis, S Pettifer, B Rost, M Corpas* (2015). BioJS: Anatomy of a Life Science Open Source Community. eLife 4, e07009
  16. G Rallapalli, Fraxinus Players, DGO Saunders, K Yoshida, A Edwards, CA Lugo, S Collin, B Clavijo, M Corpas, D Swarbreck, M Clark, JA Downie, S Kamoun, Team Cooper, D MacLean (2015). Fraxinus: a citizen science game where players improve software DNA alignments & a model for strategising in crowdsouring. eLife 4, e07460
  17. F Psomopoulos*, AM Duarte*, C Blanchet, AM Bonvin, M Corpas, A Franc, RC Jimenez, J Marco de Lucas, T Nyrönen, G Sipos, SB Suhr (2015). Future opportunities and future trends for e-infrastructures and life sciences: going beyond grid to enable life science data analysis.  Genet. 6:197
  18. TK Atwood, E Bongcam-Rudloff, ME Brazas, M Corpas, P Gaudet, F Lewitter*, N Mulder, PM Palagi, MV Schneider, CW van Gelder, The GOBLET Consortium (2015). GOBLET: The Global Organisation for Bioinformatics Learning, Education and Training. PLoS Comput Biol. 2015 Apr 9;11(4):e1004143
  19. A Budd*, M Corpas*, MD Brazas*, FC Fuller*, J Goecks, NJ Mulder, M Michaut, BF Ouellette, A Pawlik, N Blomberg (2015). A quick guide for building a successful bioinformatics community. PLoS Comput Biol 2015 Feb 5;11(2):e1003972
  20. A Budd*, H Dinkel, M Corpas, FC Fuller, L Rubinat, DP Devos, PH Khoueiry, KU Förstner, F Georgatos, F Rowland, M Sharan, JX Binder, T Grace, K Traphagen, A Gristwood, NT Wood (2015). Ten simple rules for organizing an unconference. PLoS Comput Biol 2015 Feb 5;11(2):e1003972
  21. M Corpas*, RC Jimenez, E Bongcam-Rudloff, A Budd, MD Brazas, PL Fernandes, B Gaeta, C van Gelder, E Korpelainen, F Lewitter, A McGrath, D MacLean, PM Palagi, K Rother, J Taylor, A Via, M Watson, MV Schneider, TK Attwood (2014). The GOBLET training portal: a global repository of bioinformatics training materials, courses and trainers. Bioinformatics, btu601
  22. D Saunders, K Yoshida, C Sambles, R Glover, B Clavijo, M Corpas, D Bunting, S Dong, M Clark, D Swarbreck, S Ayling, M Bashton, S Collin, T Hosoya, A Edwards, L Crossman, G Etherington, J Win, L Cano, D Studholme, JA Downie, M Caccamo, S Kamoun, D Maclean* (2014). Crowdsourced analysis of ash and ash dieback through the Open Ash Dieback project: A year 1 report on datasets and analyses contributed by a self-organising community. BioRxiv 2014
  23. M Corpas* (2014). The BioJS article collection of open source components for biological data visualisation. F1000Research2014, 3:56
  24. M Corpas*, RC Jimenez, SJ Carbon, A García, L Garcia, T Goldberg, J Gomez, A Kalderimis, SE Lewis, I Mulvany, A Pawlik, F Rowland, Gustavo Salazar, F Schreiber, I Sillitoe, WH Spooner, A Thanki, JM Villaveces, G Yachdav, Henning Hermjakob* (2014). BioJS: an open source standard for biological visualisation – its status in 2014. F1000Research2014, 3:55
  25. AS Thanki*, S Caim, M Corpas, RP Davey (2014). DNAContentViewera BioJS component to visualise GC/AT Content. F1000Research 2014, 3:54
  26. AS Thanki*, RC Jimenez, GG Kaithakottil, M Corpas, RP Davey (2014). wigExplorer, a BioJS component to visualise wig data. F1000Research 2014, 3:53
  27. RC Jimenez, JP Albar, J Bhak, MC Blatter, T Blicher, MD Brazas, C Brooksbank, A Budd, J De Las Rivas, J Dreyer, M van Driel, MJ Dunn, PL Fernandes, CWG van Gelder, H Hermjakob, V Ioannidis, DP Judge, P Kahlem, E Korpelainen, HJ Kraus, J Loveland, C Mayer, J McDowall, F Moran, N Mulder, T Nyronen, K Rother, GA Salazar, MV Schneider, R Schneider, A Via, JM Villaveces, P Yu, TK Attwood, M Corpas* (2013). iAnn: An Event Sharing Platform for the Life Sciences. Bioinformatics 29(15), 1919-1921
  28. M Corpas*, M Cariaso, A Coletta, D Weiss, AP Harrison, F Moran, H Yang (2013). A Complete Public Domain Family Genomics Dataset. BioRxiv 2013
  29. J de Ridder, Y Bromberg , M Michaut, VP Satagopam, M Corpas, G Macintyre, T Alexandrov* (2013). The young PI buzz: learning from the organizers of the Junior Principal Investigator meeting at ISMB-ECCB 2013. PLoS Comput Biol. 2013;9(11):e1003350
  30. M Corpas* (2013) Crowdsourcing the Corpasome. Source Code for Biology and Medicine2013, 8:13
  31. RC Jimenez*, M Corpas(2013). Bioinformatics Workflows and Web Services in Systems Biology Made Easy for Experimentalists. Methods Mol Biol. 2013;1021:299-310
  32. J Gómez, LJ García, GA Salazar, JV, S Gore, A García, MJ Martín, G Launay, R Alcántara, N Del Toro Ayllón, M Dumousseau, S Orchard, S Velankar, H Hermjakob, C Zong, P Ping, M Corpas, RC Jiménez* (2013). BioJS: An Open Source JavaScript Framework for Biological Data Visualization. Bioinformatics, btt100
  33. M Corpas* (2012). A Genome Blogger Manifesto. GigaScience 1:15 doi:10.1186/2047-217X-1-15
  34. GJ Swaminathan, E Bragin, EA Chatzimichali, M Corpas, AP Bevan, CF Wright, NP Carter, ME Hurles, HV Firth* (2012). DECIPHER: web-based, community resource for clinical interpretation of rare variants in developmental disorders. Hum Mol Genet. 2012 Oct 15;21(R1):R37-44.
  35. M Corpas*, S Fatumo, R Schneider (2012). How not to be a Bioinformatician. Source Code for Biology and Medicine 7:3
  36. M Corpas*, E Bragin, S Clayton, P Bevan, HV Firth (2012). Interpretation of Genomic Copy Number Variants Using DECIPHER. Current Protocols in Human Genetics. 72:8.14.1–8.14.17
  37. M Corpas* (2012). Experiences with Personal Genomics: A Family Journey. Journal of Genetic Counseling 21(3), 386-391
  38. M Corpas* (2012). Spanish Cuts: More Economic Damage.  2012 Jul 4;487(7405):38
  39. G Glusman, M Cariaso, RC Jimenez, D Swan, B Greshake, J Bhak, DW Logan, M Corpas* (2012). Low budget analysis of Direct-To-Consumer genomic testing familial data. F1000 Research, 1:3 doi: 10.3410/f1000research.1-3.v1
  40. RC Jimenez, GA Salazar, B Gel, P Bevan, J Dopazo, N Mulder, M Corpas* (2011). myKaryoView: A Light-Weight Client for Visualization of Genomic Data. PLOS ONE 6(10): e26345
  41. M Corpas, S Doumbia, O Gascuel*, N Mulder (2011). Proceedings of the Bamako 2009 Conference on the Bioinformatics of Infectious Diseases. Infection, Genetics and Evolution. Elsevier 11(4), 695-697
  42. HV Firth*, D R Fitzpatrick, M Parker, AP Bevan, M Corpas, E Bragin, S Clayton, J Barrett, ME Hurles, and NP Carter* (2010). The Deciphering Developmental Disorders (DDD) project. J Med Genet, vol. 47, pp. S43-S43 
  43. HV Firth*, SM Richards, AP Bevan, S Clayton, M Corpas, D Rajan, S Van Vooren, Y Moreau, RM Pettett, NP Carter* (2009). DECIPHER: DatabasE of Chromosomal Imbalance and Phenotype using Ensembl Resources. Am J Hum Genet. 2009 Apr;84(4):524-33
  44. M Corpas, S Richards, AP Bevan, S Van Vooren, RM Pettett, HV Firth, and NP Carter* (2009). DECIPHER: Shedding Light on Chromosomal Imbalance and Phenotype Interpretation. Chromosome Research, vol. 17, pp. 13-14
  45. M Corpas, N Gehlenborg, SC Janga, PE Bourne* (2008). Ten Simple Rules for Organizing a Scientific Meeting.PLOS Comput Biol 4(6): e1000080
  46. F Reisinger, M Corpas, J Hancock, H Hermjakob, E Birney, P Kahlem* (2008). ENFIN – an Integrative Structure for Systems Biology.Lecture Notes in Computer Science (DILS), Volume 5109/2008 132-143 
  47. N Gehlenborg*, M Corpas, SC Janga (2007) – Highlights from the Third International Society For Computational Biology Student Council Symposium at the Fifteenth Annual International Conference on Intelligent Systems for Molecular Biology. BMC Bioinformatics 2007, 8(Suppl 8):I1
  48. M Corpas, J Sinnott, D Thorne, S Pettifer, and TK Attwood*, and the PFF Consortium (2007). PFF – An integrated resource of residues and fragments critical for protein folding. BMC Systems Biology 2007, 1(Suppl 1):P48
  49. M Corpas (2007). Folding Patterns in Protein Sequences. PhD thesis submitted to the Computer Science Department of the University of Manchester, Manchester, UK.
  50. M Corpas* (2005). Community Outreach. Nature 7054-1204b, 24 August 05
  51. M Corpas* (2003). Integrating Simulation Packages via Systems Biology Markup Language. Lecture Notes in Computer Science, 2003, Volume 2602, Computational Methods in Systems Biology

*corresponding author

Manuel Corpas ORCID QR Code
Manuel Corpas ORCID QR Code